PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027037m
Common NameCARUB_v10027037mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 238aa    MW: 25441.6 Da    PI: 4.5258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027037mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.4e-1567116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Carubv10027037m  67 SVFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 116
                      689***975..6*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.52E-1667124No hitNo description
SuperFamilySSF541713.86E-1767124IPR016177DNA-binding domain
PfamPF008479.0E-967116IPR001471AP2/ERF domain
SMARTSM003801.4E-2568130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2568124IPR001471AP2/ERF domain
PROSITE profilePS5103219.36168124IPR001471AP2/ERF domain
PRINTSPR003678.2E-66980IPR001471AP2/ERF domain
PRINTSPR003678.2E-6106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSTTNSPTT GNQETTVRQV SIALPSKPSD QSPQSSPSSS SSPRPCPLVP GGSPARRTTT  60
GLSGKHSVFR GIRLRNGKWV SEIREPRKTT RIWLGTYPVP EMAAAAYDVA ALALKGSDAV  120
LNFPGLALTY VAPVSNSAAD IRAAAGKAAE MKQPDPGEAE KVPEPGQPEK EEEVEVVEEE  180
GLCSLEFMDE EAMLNMPTLL TEMAEGMLMS PPRMMITPTV DDDSPENHQG DNLWSYK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154780.0AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764640.0AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281020.11e-174hypothetical protein CARUB_v10027037mg
SwissprotQ9FJ901e-111ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLR0GRU91e-174R0GRU9_9BRAS; Uncharacterized protein
STRINGscaffold_801641.11e-112(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-89ERF family protein